Saturday, April 30, 2022

Escape from MAC's TCP

Understanding the mysteries of birth and death is a complicated affair that has preoccupied mankind from time immemorial. Escaping from the miseries inherent in the cycle of birth and death has been propounded as the ultimate goal of life in eastern religions. Nirvana or liberation from the "beginningless cycle of repeated birth, mundane existence, and dying again" is something that countless spiritual seekers aspire to attain. Attaining liberation requires the utmost faith and effort and is never available to those who doubt everything. In fact, the Bhagavat Gita goes so far as to say, "sanśhayātmā vinaśhyati." in chapter-4.40. Hence, the doubting soul has happiness neither in this world nor in the next.

Yet, one can have a doubting soul that fails to understand this sublime transcendental knowledge. Escaping from something simpler may be possible for such doomed souls. A recent pre-print by Sharma et al. focuses on the escape from the MAC (Membrane Attack Complex) encoded by the TCP (Terminal Complement Pathway). In their manuscript titled "Birth and Death in Terminal Complement Pathway," Sharma et al. investigate the emergence of the terminal component pathway in early vertebrates using sequence similarity analysis, comparison of exon length, phase, and domain order. Starting with "Four possible scenarios for the birth of the terminal complement pathway (TCP)," the authors evaluate each scenario against available data to find the most supported aspects. As part of their investigation, the "Status of terminal complement pathway (TCP) components" is identified in representative species from various vertebrate clades. Their research discovered that the complement C9 gene has been duplicated in several species of the order Squamata and potentially degraded in Galliform birds.

The complement C9 of chicken and other Galliform birds has escaped MAC's TCP. Death does not mean liberation. So how do we know that C9 is liberated and not simply dead? Sharma et al. find that the chicken repeat 1 (CR1) element is inserted at the C9 locus in the intronic regions and in the middle of exons. The presence of CR1 elements within the exons disrupts the coding frame and will continue to do so until it is removed. Hence, the re-birth of the C9 gene would require a careful excision of the CR1 elements to reestablish the reading frame. Based on the relatively special type of gene death seen in C9, one could argue a scenario of liberation. But how permanent is liberation? Can a liberated soul be again condemned to a cycle of birth and death? 

Does the soul merge with god after liberation, or does it just become part of a cosmic soul distinct from god? Liberation is even more challenging to understand than birth and death as it remains a primarily theoretical concept for us mere mortals. Nonetheless, C9 is dead; long live the TCP!

Saturday, April 23, 2022

Transcendental Knowledge: Jnana Karm Sanyas Yog

Chapter 4: With 42 verses or shlokas, the fourth chapter is similar in length to the first and third chapters. 

Arjuna (Shloka 4): 1 shloka

Krishna, the Supreme Personality of Godhead (Shloka 1-3;5-42): 41 shlokas

Brief Summary: In this chapter, Lord Krishna highlights that knowledge of the Bhagavad Gita has been transferred in disciplic succession since time immemorial :

Lord Krishna--> Sun God --> Manu--> Ikhshvaku

However, this succession was broken over time due to reasons not mentioned in the original text. Hence, the Lord restored this transcendental knowledge through his devotee and dear friend Arjuna. In this chapter's only shloka attributed to Arjuna, he has raised a doubt that the Sun god is from a much older period, then how Lord Krishna could have preached the Gita to him? 

The rest of the Shlokas involve a detailed answer from lord Krishna to this question. Lord Krishna emphasized that all souls are transcendental and have existed for many lifetimes. The only difference is that the memory of souls is limited to the present life due to limited sense perception. However, lord Krishna remembers everything. 

Two Shlokas (7 & 8) made famous by the television series Mahabaratha are part of this chapter. The interpretation of these two shlokas is that whenever irreligion becomes predominant, the lord himself appears on this planet to re-establish principles of religion. The concept of moksha is again explained in the subsequent shlokas. Moksha, or liberation from the endless cycles of birth and death, is the ultimate aim of life and can be attained by total surrender to the divine. Freedom from attachment, fear, anger, and fruitive activities will pave the path towards liberation. We cannot please Krishna with our fruitive efforts. 

  • Distinguishing between Action, Inaction, and Forbidden action is complex and requires subtlety.
  • Abandoning proprietorship over our own possessions. 

One of the most commonly recited Shlokas before consumption of food in India is Shloka 24, which states, "For those who are completely absorbed in God-consciousness, the oblation is Brahman, the ladle with which it is offered is Brahman, the act of offering is Brahman, and the sacrificial fire is also Brahman. Such persons, who view everything as God, easily attain Him." 

i.e., oblation==ladle==act of offering==sacrificial fire==Brahman

Those who are interested in self-realization offer various types of oblations, such as:

  1. functions of all the senses, the vital force [breath]
  2. material possessions, practice the yoga of eightfold mysticism
  3. study the Vedas for the advancement of transcendental knowledge
  4. practice breath control (pranayama)
Hence, sacrifice of one form or the other is required for spiritual attainment. Another essential aspect of spiritual life is the guidance of a spiritual master (guru/self-realized soul). The realization of transcendental knowledge can lead to the liberation of even sinners. 

Favorite Shlokas:

Shloka 7:

yada yada hi dharmasya
glanir bhavati bharata
abhyutthanam adharmasya
tadatmanam srjamy aham

Shloka 8:

paritranaya sadhunam
vinasaya ca duskrtam
dharma-samsthapanarthaya
sambhavami yuge yuge

Shloka 24:

brahmarpanam brahma havir
brahmagnau brahmana hutam
brahmaiva tena gantavyam
brahma-karma-samadhina